IRootLab: a free and open-source MATLAB toolbox for vibrational biospectroscopy data analysis
نویسندگان
چکیده
SUMMARY IRootLab is a free and open-source MATLAB toolbox for vibrational biospectroscopy (VBS) data analysis. It offers an object-oriented programming class library, graphical user interfaces (GUIs) and automatic MATLAB code generation. The class library contains a large number of methods, concepts and visualizations for VBS data analysis, some of which are introduced in the toolbox. The GUIs provide an interface to the class library, including a module to merge several spectral files into a dataset. Automatic code allows developers to quickly write VBS data analysis scripts and is a unique resource among tools for VBS. Documentation includes a manual, tutorials, Doxygen-generated reference and a demonstration showcase. IRootLab can handle some of the most popular file formats used in VBS. License: GNU-LGPL. AVAILABILITY Official website: http://irootlab.googlecode.com/. SUPPLEMENTARY INFORMATION Supplementary data are available at Bioinformatics online.
منابع مشابه
Microarray Data Analysis Toolbox (MDAT): for normalization, adjustment and analysis of gene expression data
SUMMARY We introduce a novel Matlab toolbox for microarray data analysis. This toolbox uses normalization based upon a normally distributed background and differential gene expression based on five statistical measures. The objects in this toolbox are open source and can be implemented to suit your application. AVAILABILITY MDAT v1.0 is a Matlab toolbox and requires Matlab to run. MDAT is fre...
متن کاملAutomated Microarray Image Analysis Toolbox for MATLAB
UNLABELLED The Automated Microarray Image Analysis (AMIA) Toolbox for MATLAB is a flexible, open-source, microarray image analysis tool that allows the user to customize analyses of microarray image sets. This tool provides several methods to identify and quantify spot statistics, as well as extensive diagnostic statistics and images to evaluate data quality and array processing. The open, modu...
متن کاملA Novel Toolbox for Generating Realistic Biological Cell Geometries for Electromagnetic Microdosimetry
Researchers in bioelectromagnetics often require realistic tissue, cellular and sub-cellular geometry models for their simulations. However, biological shapes are often extremely irregular, while conventional geometrical modeling tools on the market cannot meet the demand for fast and efficient construction of irregular geometries. We have designed a free, user-friendly tool in MATLAB that comb...
متن کاملThe Biopsychology-Toolbox: a free, open-source Matlab-toolbox for the control of behavioral experiments.
The Biopsychology-Toolbox is a free, open-source Matlab-toolbox for the control of behavioral experiments. The major aim of the project was to provide a set of basic tools that allow programming novices to control basic hardware used for behavioral experimentation without limiting the power and flexibility of the underlying programming language. The modular design of the toolbox allows portatio...
متن کاملMocap Toolbox – a Matlab Toolbox for Computational Analysis of Movement Data
The MoCap Toolbox is a set of functions written in Matlab for analyzing and visualizing motion capture data. It is aimed at investigating music-related movement, but can be beneficial for other research areas as well. Since the toolbox code is available as open source, users can freely adapt the functions according to their needs. Users can also make use of the additional functionality that Mat...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید
ثبت ناماگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید
ورودعنوان ژورنال:
- Bioinformatics
دوره 29 8 شماره
صفحات -
تاریخ انتشار 2013